Given your description, I'd be careful about buying this off. It may in fact be real yet. Simply pushing a boroscope down and seeing a root is not sufficient evidence it has gone away.
It may in fact be nothing, but I'd damn sure not buy it off on a visual given your description. I suggest mapping the area of concern out ultrasonically, and re-examine.
If in fact it is a flaw, there should be a phase reversal at the interface of the flaw, with a subsequent back-wall reflection from the root area if your root is as large as your making out. For that, use the RF display on the scope.
If in fact it was the root, and the root is fine, then I'd be questioning the abilities of your UT techs. You shouldn't have three of them coming up with the same wrong answer.
Regards,
Gerald
(edit) if by inserting a probe down the pipe you mean they put the transducer in the pipe and scanned from the I.D. that for sure is no guarantee it's gone, as it would have an inherent change in impingment properties. (/edit)