So far we know this guy has WPS's, but does he have the PQR's to back the WPS's? Remember that there is no prequalified status in D1.2 and you joints must be qualified. If he does have all the PQR's for the WPS's, then it was probably just a typo. Double check the WPS to what they are actually doing. You may in fact have a WPS for Short Circuit transfer for thinner material for a previous job. The guys on the floor sound like they know what they are doing and know to setup for spray on that thickness of material. In other words they might just be working without a proper WPS which happens all the time. IN this case, just have the CO qaulify some fillet procedures per (SEC 3 AWS D1.2) with the settings the guys are using on the floor. This will show you that the welds they were producing on your parts more then likely are quality welds beneath the surface. If they cannot qualify a procedure using the settings the guys were using on the floor, well, we'll just say you might have a problem.
You have to watch out for these kind of fabricators. I run into this a lot with the whole "Oh yeah, I have WPS's and WQTR's so I can build your parts". Then you go over there to review them and they don't have what you need. You see it a lot in carbon steel fabrication where someone came in and wrote up a bunch of prequalified WPS's and everything you need to be done has to be qualfied. Then they ask you, "how do you do that" and all you can do is scratch your head. This code work gets pretty harry sometimes and can get a company that doesn't know what they are doing into a lot of trouble.