You are correct that a change in progression from uphill to downhill or downhill to uphill is not an essential variable for a WPS. However, it is an essential variable for welder performance qualification in both the GTAW and SMAW processes. See QW-353, QW-356, QW-416 and QW-405.3.
In regards to changing a nonessential variable on the WPS; i.e. downhill progression to uphill progression, see QW-200.1(c)
"QW-200.1(c) Changes to the WPS. Changes may be made in the nonessential variables of a WPS to suit production requirements without requalification provided such changes are documented with respect to the essential, nonessential, and, when required, supplementary essential variables for each process. This may be by amendment to the WPS or by use of a new WPS."
This appears to be the simple solution to your question. Amend the existing WPS or write a new WPS using the existing PQR and give the new or amended WPS to the welder for use during welder qualification.