Many decades ago, during my apprentice period, I worked for a tank construction and repair facility. All tanks coming in for repair were steamed for 24 hrs minimum, and then, cooled and metered for fume concentration before entry for washing down.
Bulkheads between tank compartments were an integral part of tank structure, and were reinforced to prevent flexing between each 500-1000 gallon compartment. Bottoms were 12 guage, side-'tops were 16 guage, and all inside work was ventilated by blower (presently, an air supplied respirator would be required). Stainless was used only for food grade transport, and all welds had to be ground, so this tank has probably already been repurposed. Alteration of bulkheads may increase possibility of flexing and cracking of total tank structure, so an engineering opinion should be obtained.
Al is correct: this is not a DIY project.
Manifold the external drains and use the drains and a pump, if necessary, to fill, rather than gravity. This would be my suggestion, if the project is undertaken at all.