I don't agree with somebodys statement above, that GMAW is a hotter process than GTAW on aluminum when you relate it to total heat input.. GMAW provides a high current at the arc, however travel speed may be increased more than 75% over that of GMAW so overall GMAW provides less heat input, a smaller heat affected zone than GMAW which will increase the chance of retaining more of the Heat treatment properties that your T6 condition provides. Distortion control is also improved with GMAW.
Along with Fred's suggestion
Using a GMAW power supply that has adjustable controls for the weld terminations might be a solution.
GMAW aluminum spray transfer is sometimes difficult to control at weld terminations.. If the end of the weld is starved of filler or too much heat builds at the end of a thin section, the result if often cracking in the crater left at the weld termination. (which sounds like what your describing)
It's almost always about process control...
Lincoln electric explains their newest crater fill function as follows:
http://content.lincolnelectric.com/pdfs/products/literature/nx290.pdfThe crater fill function
works similar to the start function, but in reverse.
Therefore, the starting WFS and trim would ramp
down from the welding WFS and trim over a preset
time after the operator releases the gun trigger.
Now with the TOTAL s2f(TM) welding process, the crater
fill function consists of two steps. The WFS and trim
will ramp down to a selected point for half the time set
for crater fill and then will stay at those values for the
remaining portion of the weld, called the cap. This
gives an enhanced and more consistent crater fill
than with previous methods and creates a button of
weld metal.