Without seeing pictures I think your question is going to be hard to answer.
A generic answer is, skip around, and back step any long welds. Good idea when fabricating anything is monitor the movement with a tape measure, and square. Don't just drop your helmet and weld away!
If you want a book on it, read Masubuchi's "Analysis of Welded Structures".
Having done a great deal of reading on welding induced distortion, and being a welding engineer, I'll say this (assuming manual welding, everything changes when you go mechanized):
Bead shape (total nugget shape, not just the face) has a huge effect on distortion. Every welder is going to do something a little different in his technique/setting to affect that. Because of this, I'd be inclined to leave it up to the welder to decide the sequence of how he wants to weld it to meet the print. I'll agree with Cactus that if you're specified a document, follow it. However, if the document wasn't developed and proven on a full sized test mockup with a very experienced team of welders/techs/engineers, it's probably worthless. And that little hitch isn't really under the umbrella of what I'd consider to be the typical welder's concern.